spoon - Address the Mean-variance Relationship in Spatial Transcriptomics Data
This package addresses the mean-variance relationship in spatially resolved transcriptomics data. Precision weights are generated for individual observations using Empirical Bayes techniques. These weights are used to rescale the data and covariates, which are then used as input in spatially variable gene detection tools.
Last updated 6 days ago
spatialsinglecelltranscriptomicsgeneexpressionpreprocessing
5.10 score 18 scripts 138 downloadsspatialSimGP - Simulate Spatial Transcriptomics Data with the Mean-variance Relationship
This packages simulates spatial transcriptomics data with the mean- variance relationship using a Gaussian Process model per gene.
Last updated 27 days ago
spatialtranscriptomicsgeneexpression
4.18 score 2 scripts